medigan
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Description
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Index
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Z
A
access_token (medigan.contribute_model.github_model_uploader.GithubModelUploader attribute)
(medigan.contribute_model.zenodo_model_uploader.ZenodoModelUploader attribute)
add_all_model_executors() (medigan.generators.Generators method)
,
[1]
add_matched_entry() (medigan.select_model.model_match_candidate.ModelMatchCandidate method)
add_metadata_from_file() (medigan.contribute_model.model_contributor.ModelContributor method)
,
[1]
(medigan.generators.Generators method)
,
[1]
add_metadata_from_input() (medigan.contribute_model.model_contributor.ModelContributor method)
,
[1]
(medigan.generators.Generators method)
,
[1]
add_model_contributor() (medigan.generators.Generators method)
,
[1]
add_model_executor() (medigan.generators.Generators method)
,
[1]
add_model_to_config() (medigan.config_manager.ConfigManager method)
,
[1]
(medigan.generators.Generators method)
,
[1]
add_package_link_to_metadata() (medigan.contribute_model.github_model_uploader.GithubModelUploader method)
are_keys_also_matched (medigan.select_model.model_match_candidate.ModelMatchCandidate attribute)
B
BaseModelUploader (class in medigan.contribute_model.base_model_uploader)
C
call_without_removable_params() (medigan.utils.Utils static method)
check_if_is_match() (medigan.select_model.model_match_candidate.ModelMatchCandidate method)
condition (medigan.model_visualizer.ModelVisualizer attribute)
,
[1]
conditional (medigan.model_visualizer.ModelVisualizer attribute)
,
[1]
config_dict (medigan.config_manager.ConfigManager attribute)
,
[1]
CONFIG_FILE_FOLDER (in module medigan.constants)
CONFIG_FILE_KEY_DEPENDENCIES (in module medigan.constants)
CONFIG_FILE_KEY_DESCRIPTION (in module medigan.constants)
CONFIG_FILE_KEY_EXECUTION (in module medigan.constants)
CONFIG_FILE_KEY_GENERATE (in module medigan.constants)
CONFIG_FILE_KEY_GENERATE_ARGS (in module medigan.constants)
CONFIG_FILE_KEY_GENERATE_ARGS_BASE (in module medigan.constants)
CONFIG_FILE_KEY_GENERATE_ARGS_CUSTOM (in module medigan.constants)
CONFIG_FILE_KEY_GENERATE_ARGS_INPUT_LATENT_VECTOR_SIZE (in module medigan.constants)
CONFIG_FILE_KEY_GENERATE_ARGS_MODEL_FILE (in module medigan.constants)
CONFIG_FILE_KEY_GENERATE_ARGS_NUM_SAMPLES (in module medigan.constants)
CONFIG_FILE_KEY_GENERATE_ARGS_OUTPUT_PATH (in module medigan.constants)
CONFIG_FILE_KEY_GENERATE_ARGS_SAVE_IMAGES (in module medigan.constants)
CONFIG_FILE_KEY_GENERATE_NAME (in module medigan.constants)
CONFIG_FILE_KEY_GENERATOR (in module medigan.constants)
CONFIG_FILE_KEY_GENERATOR_NAME (in module medigan.constants)
CONFIG_FILE_KEY_IMAGE_SIZE (in module medigan.constants)
CONFIG_FILE_KEY_MODEL_EXTENSION (in module medigan.constants)
CONFIG_FILE_KEY_MODEL_NAME (in module medigan.constants)
CONFIG_FILE_KEY_PACKAGE_LINK (in module medigan.constants)
CONFIG_FILE_KEY_PACKAGE_NAME (in module medigan.constants)
CONFIG_FILE_KEY_PERFORMANCE (in module medigan.constants)
CONFIG_FILE_KEY_SELECTION (in module medigan.constants)
CONFIG_FILE_KEY_TAGS (in module medigan.constants)
CONFIG_FILE_NAME_AND_EXTENSION (in module medigan.constants)
CONFIG_FILE_URL (in module medigan.constants)
config_manager (medigan.generators.Generators attribute)
,
[1]
(medigan.select_model.model_selector.ModelSelector attribute)
,
[1]
CONFIG_TEMPLATE_FILE_NAME_AND_EXTENSION (in module medigan.constants)
CONFIG_TEMPLATE_FILE_URL (in module medigan.constants)
ConfigManager (class in medigan.config_manager)
,
[1]
contribute() (medigan.generators.Generators method)
,
[1]
copy() (medigan.utils.Utils static method)
create_upload_description() (medigan.contribute_model.zenodo_model_uploader.ZenodoModelUploader method)
create_upload_json_data() (medigan.contribute_model.zenodo_model_uploader.ZenodoModelUploader method)
D
deep_get() (medigan.utils.Utils static method)
DEFAULT_OUTPUT_FOLDER (in module medigan.constants)
dependencies (medigan.execute_model.model_executor.ModelExecutor attribute)
,
[1]
deserialized_model_as_lib (medigan.execute_model.model_executor.ModelExecutor attribute)
,
[1]
dict_to_lowercase() (medigan.utils.Utils static method)
download_file() (medigan.utils.Utils static method)
download_package (medigan.execute_model.model_executor.ModelExecutor attribute)
,
[1]
E
empty_upload() (medigan.contribute_model.zenodo_model_uploader.ZenodoModelUploader method)
execution_config (medigan.execute_model.model_executor.ModelExecutor attribute)
,
[1]
F
find_matching_models_by_values() (medigan.generators.Generators method)
,
[1]
(medigan.select_model.model_selector.ModelSelector method)
,
[1]
find_model_and_generate() (medigan.generators.Generators method)
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[1]
find_model_executor_by_id() (medigan.generators.Generators method)
,
[1]
find_models_and_rank() (medigan.generators.Generators method)
,
[1]
(medigan.select_model.model_selector.ModelSelector method)
,
[1]
find_models_rank_and_generate() (medigan.generators.Generators method)
,
[1]
G
generate() (medigan.execute_model.model_executor.ModelExecutor method)
,
[1]
(medigan.generators.Generators method)
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[1]
generate_method_args (medigan.execute_model.model_executor.ModelExecutor attribute)
,
[1]
generate_method_name (medigan.execute_model.model_executor.ModelExecutor attribute)
,
[1]
Generators (class in medigan.generators)
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[1]
get_all_matching_elements() (medigan.select_model.model_match_candidate.ModelMatchCandidate method)
get_as_torch_dataloader() (medigan.generators.Generators method)
,
[1]
get_as_torch_dataset() (medigan.generators.Generators method)
,
[1]
get_config_by_id() (medigan.config_manager.ConfigManager method)
,
[1]
(medigan.generators.Generators method)
,
[1]
get_generate_function() (medigan.generators.Generators method)
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[1]
get_model_contributor_by_id() (medigan.generators.Generators method)
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[1]
get_model_executor() (medigan.generators.Generators method)
,
[1]
get_models_by_key_value_pair() (medigan.generators.Generators method)
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[1]
(medigan.select_model.model_selector.ModelSelector method)
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[1]
get_selection_criteria_by_id() (medigan.generators.Generators method)
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[1]
(medigan.select_model.model_selector.ModelSelector method)
,
[1]
get_selection_criteria_by_ids() (medigan.generators.Generators method)
,
[1]
(medigan.select_model.model_selector.ModelSelector method)
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[1]
get_selection_keys() (medigan.generators.Generators method)
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[1]
(medigan.select_model.model_selector.ModelSelector method)
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[1]
get_selection_values_for_key() (medigan.generators.Generators method)
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[1]
(medigan.select_model.model_selector.ModelSelector method)
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[1]
github_model_uploader (medigan.contribute_model.model_contributor.ModelContributor attribute)
,
[1]
GITHUB_REPO (in module medigan.constants)
GITHUB_TITLE (in module medigan.constants)
GithubModelUploader (class in medigan.contribute_model.github_model_uploader)
H
has_more_than_n_diff_pixel_values() (medigan.utils.Utils static method)
I
image_size (medigan.execute_model.model_executor.ModelExecutor attribute)
,
[1]
INIT_PY_FILE (in module medigan.constants)
init_py_path (medigan.contribute_model.model_contributor.ModelContributor attribute)
,
[1]
input_latent_vector_size (medigan.model_visualizer.ModelVisualizer attribute)
,
[1]
install_model() (in module medigan.execute_model.install_model_dependencies)
is_case_sensitive (medigan.select_model.model_match_candidate.ModelMatchCandidate attribute)
is_config_loaded (medigan.config_manager.ConfigManager attribute)
,
[1]
is_file_in() (medigan.utils.Utils static method)
is_file_located_or_downloaded() (medigan.utils.Utils static method)
is_match (medigan.select_model.model_match_candidate.ModelMatchCandidate attribute)
is_model_already_unpacked() (medigan.execute_model.model_executor.ModelExecutor method)
,
[1]
is_model_executor_already_added() (medigan.generators.Generators method)
,
[1]
is_model_in_config() (medigan.config_manager.ConfigManager method)
,
[1]
is_model_metadata_valid() (medigan.config_manager.ConfigManager method)
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[1]
(medigan.generators.Generators method)
,
[1]
is_new_download_forced (medigan.config_manager.ConfigManager attribute)
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[1]
is_url_valid() (medigan.utils.Utils static method)
is_value_for_key_already_set() (medigan.contribute_model.model_contributor.ModelContributor method)
,
[1]
K
key (medigan.select_model.matched_entry.MatchedEntry attribute)
L
labels (medigan.execute_model.synthetic_dataset.SyntheticDataset attribute)
list_models() (medigan.generators.Generators method)
,
[1]
list_to_lowercase() (medigan.utils.Utils static method)
load_config_file() (medigan.config_manager.ConfigManager method)
,
[1]
load_metadata_template() (medigan.contribute_model.model_contributor.ModelContributor method)
,
[1]
locate_or_create_model_zip_file() (medigan.contribute_model.zenodo_model_uploader.ZenodoModelUploader method)
M
masks (medigan.execute_model.synthetic_dataset.SyntheticDataset attribute)
match_model_id() (medigan.config_manager.ConfigManager method)
matched_entries (medigan.select_model.model_match_candidate.ModelMatchCandidate attribute)
MatchedEntry (class in medigan.select_model.matched_entry)
matching_element (medigan.select_model.matched_entry.MatchedEntry attribute)
max_input_value (medigan.model_visualizer.ModelVisualizer attribute)
,
[1]
medigan
module
medigan.config_manager
module
,
[1]
medigan.constants
module
medigan.contribute_model
module
medigan.contribute_model.base_model_uploader
module
medigan.contribute_model.github_model_uploader
module
medigan.contribute_model.model_contributor
module
,
[1]
medigan.contribute_model.zenodo_model_uploader
module
medigan.exceptions
module
medigan.execute_model
module
medigan.execute_model.install_model_dependencies
module
medigan.execute_model.model_executor
module
,
[1]
medigan.execute_model.synthetic_dataset
module
medigan.generators
module
,
[1]
medigan.model_visualizer
module
,
[1]
medigan.select_model
module
medigan.select_model.matched_entry
module
medigan.select_model.model_match_candidate
module
medigan.select_model.model_selector
module
,
[1]
medigan.utils
module
metadata (medigan.contribute_model.base_model_uploader.BaseModelUploader attribute)
metadata_file_path (medigan.contribute_model.model_contributor.ModelContributor attribute)
,
[1]
mkdirs() (medigan.utils.Utils static method)
model_executor (medigan.model_visualizer.ModelVisualizer attribute)
,
[1]
model_executors (medigan.generators.Generators attribute)
,
[1]
model_extension (medigan.execute_model.model_executor.ModelExecutor attribute)
,
[1]
MODEL_FOLDER (in module medigan.constants)
MODEL_ID (in module medigan.constants)
model_id (medigan.contribute_model.base_model_uploader.BaseModelUploader attribute)
(medigan.contribute_model.github_model_uploader.GithubModelUploader attribute)
(medigan.contribute_model.model_contributor.ModelContributor attribute)
,
[1]
(medigan.contribute_model.zenodo_model_uploader.ZenodoModelUploader attribute)
(medigan.execute_model.model_executor.ModelExecutor attribute)
,
[1]
(medigan.select_model.model_match_candidate.ModelMatchCandidate attribute)
model_ids (medigan.config_manager.ConfigManager attribute)
,
[1]
model_name (medigan.execute_model.model_executor.ModelExecutor attribute)
,
[1]
model_selection_dicts (medigan.select_model.model_selector.ModelSelector attribute)
,
[1]
model_selector (medigan.generators.Generators attribute)
,
[1]
ModelContributor (class in medigan.contribute_model.model_contributor)
,
[1]
ModelExecutor (class in medigan.execute_model.model_executor)
,
[1]
ModelMatchCandidate (class in medigan.select_model.model_match_candidate)
ModelSelector (class in medigan.select_model.model_selector)
,
[1]
ModelVisualizer (class in medigan.model_visualizer)
,
[1]
module
medigan
medigan.config_manager
,
[1]
medigan.constants
medigan.contribute_model
medigan.contribute_model.base_model_uploader
medigan.contribute_model.github_model_uploader
medigan.contribute_model.model_contributor
,
[1]
medigan.contribute_model.zenodo_model_uploader
medigan.exceptions
medigan.execute_model
medigan.execute_model.install_model_dependencies
medigan.execute_model.model_executor
,
[1]
medigan.execute_model.synthetic_dataset
medigan.generators
,
[1]
medigan.model_visualizer
,
[1]
medigan.select_model
medigan.select_model.matched_entry
medigan.select_model.model_match_candidate
medigan.select_model.model_selector
,
[1]
medigan.utils
O
order_dict_by_value() (medigan.utils.Utils static method)
other_imaging_output (medigan.execute_model.synthetic_dataset.SyntheticDataset attribute)
P
PACKAGE_EXTENSION (in module medigan.constants)
package_link (medigan.execute_model.model_executor.ModelExecutor attribute)
,
[1]
package_name (medigan.contribute_model.model_contributor.ModelContributor attribute)
,
[1]
(medigan.execute_model.model_executor.ModelExecutor attribute)
,
[1]
package_path (medigan.contribute_model.model_contributor.ModelContributor attribute)
,
[1]
(medigan.execute_model.model_executor.ModelExecutor attribute)
,
[1]
parse_args() (in module medigan.execute_model.install_model_dependencies)
publish() (medigan.contribute_model.zenodo_model_uploader.ZenodoModelUploader method)
push() (medigan.contribute_model.base_model_uploader.BaseModelUploader method)
(medigan.contribute_model.github_model_uploader.GithubModelUploader method)
(medigan.contribute_model.zenodo_model_uploader.ZenodoModelUploader method)
push_to_github() (medigan.contribute_model.model_contributor.ModelContributor method)
,
[1]
(medigan.generators.Generators method)
,
[1]
push_to_zenodo() (medigan.contribute_model.model_contributor.ModelContributor method)
,
[1]
(medigan.generators.Generators method)
,
[1]
R
rank_models_by_performance() (medigan.generators.Generators method)
,
[1]
(medigan.select_model.model_selector.ModelSelector method)
,
[1]
read_in_json() (medigan.utils.Utils static method)
recursive_search_for_values() (medigan.select_model.model_selector.ModelSelector method)
,
[1]
S
samples (medigan.execute_model.synthetic_dataset.SyntheticDataset attribute)
serialised_model_file_path (medigan.execute_model.model_executor.ModelExecutor attribute)
,
[1]
split_images_and_masks_no_ordering() (medigan.utils.Utils static method)
split_images_masks_and_labels() (medigan.utils.Utils static method)
store_dict_as() (medigan.utils.Utils static method)
SyntheticDataset (class in medigan.execute_model.synthetic_dataset)
T
target_values (medigan.select_model.model_match_candidate.ModelMatchCandidate attribute)
target_values_operator (medigan.select_model.model_match_candidate.ModelMatchCandidate attribute)
TEMPLATE_FOLDER (in module medigan.constants)
test_model() (medigan.generators.Generators method)
,
[1]
transform (medigan.execute_model.synthetic_dataset.SyntheticDataset attribute)
U
unzip_and_return_unzipped_path() (medigan.utils.Utils static method)
unzip_archive() (medigan.utils.Utils static method)
upload() (medigan.contribute_model.zenodo_model_uploader.ZenodoModelUploader method)
upload_descriptive_data() (medigan.contribute_model.zenodo_model_uploader.ZenodoModelUploader method)
Utils (class in medigan.utils)
V
validate_and_update_model_weights_path() (medigan.contribute_model.model_contributor.ModelContributor method)
,
[1]
validate_init_py_path() (medigan.contribute_model.model_contributor.ModelContributor method)
,
[1]
validate_local_model_import() (medigan.contribute_model.model_contributor.ModelContributor method)
,
[1]
validate_model_id() (medigan.contribute_model.model_contributor.ModelContributor method)
,
[1]
value (medigan.select_model.matched_entry.MatchedEntry attribute)
visualize() (medigan.generators.Generators method)
,
[1]
(medigan.model_visualizer.ModelVisualizer method)
,
[1]
Z
ZENODO_API_URL (in module medigan.constants)
ZENODO_GENERIC_MODEL_DESCRIPTION (in module medigan.constants)
ZENODO_HEADERS (in module medigan.constants)
ZENODO_LINE_BREAK (in module medigan.constants)
zenodo_model_uploader (medigan.contribute_model.model_contributor.ModelContributor attribute)
,
[1]
ZenodoModelUploader (class in medigan.contribute_model.zenodo_model_uploader)
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